"""Auto-generated amino acid data with calculated masses"""
# DO NOT EDIT - generated by gen_amino_acids.py
from enum import StrEnum
from .dclass import AminoAcidInfo
[docs]
class AminoAcid(StrEnum):
"""Enumeration of amino acid single-letter codes."""
A = "A"
B = "B"
C = "C"
D = "D"
E = "E"
F = "F"
G = "G"
H = "H"
I = "I"
J = "J"
K = "K"
L = "L"
M = "M"
N = "N"
O = "O"
P = "P"
Q = "Q"
R = "R"
S = "S"
T = "T"
U = "U"
V = "V"
W = "W"
X = "X"
Y = "Y"
Z = "Z"
[docs]
@classmethod
def from_str(cls, aa: str) -> "AminoAcid":
"""Get AminoAcid enum from string"""
return cls(aa.upper())
AMINO_ACID_INFOS: dict[AminoAcid, AminoAcidInfo] = {
AminoAcid.A: AminoAcidInfo(
id=AminoAcid.A,
name="Alanine",
three_letter_code="Ala",
formula="C3H5NO",
monoisotopic_mass=71.0371137851,
average_mass=71.0780195962,
dict_composition={'C': 3, 'H': 5, 'N': 1, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.B: AminoAcidInfo(
id=AminoAcid.B,
name="Asparagine or Aspartic acid",
three_letter_code="Asx",
formula=None,
monoisotopic_mass=None,
average_mass=None,
dict_composition=None,
is_mass_ambiguous=True,
is_ambiguous=True,
),
AminoAcid.C: AminoAcidInfo(
id=AminoAcid.C,
name="Cysteine",
three_letter_code="Cys",
formula="C3H5NOS",
monoisotopic_mass=103.0091849595,
average_mass=103.1428070024,
dict_composition={'C': 3, 'H': 5, 'N': 1, 'O': 1, 'S': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.D: AminoAcidInfo(
id=AminoAcid.D,
name="Aspartic acid",
three_letter_code="Asp",
formula="C4H5NO3",
monoisotopic_mass=115.0269430243,
average_mass=115.0875653416,
dict_composition={'C': 4, 'H': 5, 'N': 1, 'O': 3},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.E: AminoAcidInfo(
id=AminoAcid.E,
name="Glutamic acid",
three_letter_code="Glu",
formula="C5H7NO3",
monoisotopic_mass=129.0425930888,
average_mass=129.1141827465,
dict_composition={'C': 5, 'H': 7, 'N': 1, 'O': 3},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.F: AminoAcidInfo(
id=AminoAcid.F,
name="Phenylalanine",
three_letter_code="Phe",
formula="C9H9NO",
monoisotopic_mass=147.0684139141,
average_mass=147.1741979929,
dict_composition={'C': 9, 'H': 9, 'N': 1, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.G: AminoAcidInfo(
id=AminoAcid.G,
name="Glycine",
three_letter_code="Gly",
formula="C2H3NO",
monoisotopic_mass=57.0214637207,
average_mass=57.0514021914,
dict_composition={'C': 2, 'H': 3, 'N': 1, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.H: AminoAcidInfo(
id=AminoAcid.H,
name="Histidine",
three_letter_code="His",
formula="C6H7N3O",
monoisotopic_mass=137.0589118585,
average_mass=137.1395152175,
dict_composition={'C': 6, 'H': 7, 'N': 3, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.I: AminoAcidInfo(
id=AminoAcid.I,
name="Isoleucine",
three_letter_code="Ile",
formula="C6H11NO",
monoisotopic_mass=113.0840639785,
average_mass=113.1578718108,
dict_composition={'C': 6, 'H': 11, 'N': 1, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.J: AminoAcidInfo(
id=AminoAcid.J,
name="Leucine or Isoleucine",
three_letter_code="Xle",
formula="C6H11NO",
monoisotopic_mass=113.0840639785,
average_mass=113.1578718108,
dict_composition={'C': 6, 'H': 11, 'N': 1, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=True,
),
AminoAcid.K: AminoAcidInfo(
id=AminoAcid.K,
name="Lysine",
three_letter_code="Lys",
formula="C6H12N2O",
monoisotopic_mass=128.0949630152,
average_mass=128.1725157763,
dict_composition={'C': 6, 'H': 12, 'N': 2, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.L: AminoAcidInfo(
id=AminoAcid.L,
name="Leucine",
three_letter_code="Leu",
formula="C6H11NO",
monoisotopic_mass=113.0840639785,
average_mass=113.1578718108,
dict_composition={'C': 6, 'H': 11, 'N': 1, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.M: AminoAcidInfo(
id=AminoAcid.M,
name="Methionine",
three_letter_code="Met",
formula="C5H9NOS",
monoisotopic_mass=131.0404850885,
average_mass=131.1960418121,
dict_composition={'C': 5, 'H': 9, 'N': 1, 'O': 1, 'S': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.N: AminoAcidInfo(
id=AminoAcid.N,
name="Asparagine",
three_letter_code="Asn",
formula="C4H6N2O2",
monoisotopic_mass=114.0429274414,
average_mass=114.1028043828,
dict_composition={'C': 4, 'H': 6, 'N': 2, 'O': 2},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.O: AminoAcidInfo(
id=AminoAcid.O,
name="Pyrrolysine",
three_letter_code="Pyl",
formula="C12H19N3O2",
monoisotopic_mass=237.1477268648,
average_mass=237.2986245709,
dict_composition={'C': 12, 'H': 19, 'N': 3, 'O': 2},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.P: AminoAcidInfo(
id=AminoAcid.P,
name="Proline",
three_letter_code="Pro",
formula="C5H7NO",
monoisotopic_mass=97.0527638496,
average_mass=97.1153728978,
dict_composition={'C': 5, 'H': 7, 'N': 1, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.Q: AminoAcidInfo(
id=AminoAcid.Q,
name="Glutamine",
three_letter_code="Gln",
formula="C5H8N2O2",
monoisotopic_mass=128.0585775058,
average_mass=128.1294217877,
dict_composition={'C': 5, 'H': 8, 'N': 2, 'O': 2},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.R: AminoAcidInfo(
id=AminoAcid.R,
name="Arginine",
three_letter_code="Arg",
formula="C6H12N4O",
monoisotopic_mass=156.1011110240,
average_mass=156.1859221992,
dict_composition={'C': 6, 'H': 12, 'N': 4, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.S: AminoAcidInfo(
id=AminoAcid.S,
name="Serine",
three_letter_code="Ser",
formula="C3H5NO2",
monoisotopic_mass=87.0320284047,
average_mass=87.0774245206,
dict_composition={'C': 3, 'H': 5, 'N': 1, 'O': 2},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.T: AminoAcidInfo(
id=AminoAcid.T,
name="Threonine",
three_letter_code="Thr",
formula="C4H7NO2",
monoisotopic_mass=101.0476784692,
average_mass=101.1040419254,
dict_composition={'C': 4, 'H': 7, 'N': 1, 'O': 2},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.U: AminoAcidInfo(
id=AminoAcid.U,
name="Selenocysteine",
three_letter_code="Sec",
formula="C3H5NOSe",
monoisotopic_mass=150.9536355851,
average_mass=150.0374081533,
dict_composition={'C': 3, 'H': 5, 'N': 1, 'O': 1, 'Se': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.V: AminoAcidInfo(
id=AminoAcid.V,
name="Valine",
three_letter_code="Val",
formula="C5H9NO",
monoisotopic_mass=99.0684139141,
average_mass=99.1312544059,
dict_composition={'C': 5, 'H': 9, 'N': 1, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.W: AminoAcidInfo(
id=AminoAcid.W,
name="Tryptophan",
three_letter_code="Trp",
formula="C11H10N2O",
monoisotopic_mass=186.0793129507,
average_mass=186.2103137519,
dict_composition={'C': 11, 'H': 10, 'N': 2, 'O': 1},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.X: AminoAcidInfo(
id=AminoAcid.X,
name="Any amino acid",
three_letter_code="Xaa",
formula="",
monoisotopic_mass=0.0000000000,
average_mass=0.0000000000,
dict_composition={},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.Y: AminoAcidInfo(
id=AminoAcid.Y,
name="Tyrosine",
three_letter_code="Tyr",
formula="C9H9NO2",
monoisotopic_mass=163.0633285336,
average_mass=163.1736029172,
dict_composition={'C': 9, 'H': 9, 'N': 1, 'O': 2},
is_mass_ambiguous=False,
is_ambiguous=False,
),
AminoAcid.Z: AminoAcidInfo(
id=AminoAcid.Z,
name="Glutamine or Glutamic acid",
three_letter_code="Glx",
formula=None,
monoisotopic_mass=None,
average_mass=None,
dict_composition=None,
is_mass_ambiguous=True,
is_ambiguous=True,
),
}