"""Auto-generated protease data"""
# DO NOT EDIT - generated by gen_proteases_obo.py
from enum import StrEnum
from typing import Literal
from .dclass import ProteaseInfo
[docs]
class Proteases(StrEnum):
"""Enum of protease IDs"""
ARG_C = "arg_c"
ASP_N = "asp_n"
CHYMOTRYPSIN = "chymotrypsin"
CHYMOTRYPSIN_LOW = "chymotrypsin_low"
CHYMOTRYPSIN_PROMEGA_HIGH = "chymotrypsin_promega_high"
CHYMOTRYPSIN_PROMEGA_LOW = "chymotrypsin_promega_low"
GLU_C = "glu_c"
LYS_C = "lys_c"
LYS_N = "lys_n"
PROTEINASE_K = "proteinase_k"
TRYPSIN = "trypsin"
TRYPSIN_FULL = "trypsin_full"
PROALANASE = "proalanase"
PROALANASE_LOW = "proalanase_low"
ELASTASE = "elastase"
PEPSIN = "pepsin"
THERMOLYSIN = "thermolysin"
UNSPECIFIC = "unspecific"
NO_ENZYME = "no_enzyme"
PROTEASE_LITERALS = Literal[
"arg_c",
"asp_n",
"chymotrypsin",
"chymotrypsin_low",
"chymotrypsin_promega_high",
"chymotrypsin_promega_low",
"glu_c",
"lys_c",
"lys_n",
"proteinase_k",
"trypsin",
"trypsin_full",
"proalanase",
"proalanase_low",
"elastase",
"pepsin",
"thermolysin",
"unspecific",
"no_enzyme",
]
PROTEASES_DICT: dict[Proteases, ProteaseInfo] = {
Proteases.ARG_C: ProteaseInfo(
id=Proteases.ARG_C,
name="Arg-C",
full_name="Clostripain",
regex='(?<=R)',
),
Proteases.ASP_N: ProteaseInfo(
id=Proteases.ASP_N,
name="Asp-N",
full_name="Peptidyl-Asp metalloendopeptidase",
regex='(?=D)',
),
Proteases.CHYMOTRYPSIN: ProteaseInfo(
id=Proteases.CHYMOTRYPSIN,
name="Chymotrypsin",
full_name="Chymotrypsin (high specificity)",
regex='(?<=[FWYL])(?!P)',
),
Proteases.CHYMOTRYPSIN_LOW: ProteaseInfo(
id=Proteases.CHYMOTRYPSIN_LOW,
name="Chymotrypsin (low specificity)",
full_name="Chymotrypsin without proline restriction",
regex='(?<=[FWYL])',
),
Proteases.CHYMOTRYPSIN_PROMEGA_HIGH: ProteaseInfo(
id=Proteases.CHYMOTRYPSIN_PROMEGA_HIGH,
name="Chymotrypsin (Promega, high specificity)",
full_name="Promega Chymotrypsin High Specificity",
regex='(?<=[YFW])',
),
Proteases.CHYMOTRYPSIN_PROMEGA_LOW: ProteaseInfo(
id=Proteases.CHYMOTRYPSIN_PROMEGA_LOW,
name="Chymotrypsin (Promega, low specificity)",
full_name="Promega Chymotrypsin Low Specificity",
regex='(?<=[YFWLM])',
),
Proteases.GLU_C: ProteaseInfo(
id=Proteases.GLU_C,
name="Glu-C",
full_name="Staphylococcus aureus V8 protease",
regex='(?<=E)',
),
Proteases.LYS_C: ProteaseInfo(
id=Proteases.LYS_C,
name="Lys-C",
full_name="Lysyl endopeptidase",
regex='(?<=K)',
),
Proteases.LYS_N: ProteaseInfo(
id=Proteases.LYS_N,
name="Lys-N",
full_name="Lysyl aminopeptidase",
regex='(?=K)',
),
Proteases.PROTEINASE_K: ProteaseInfo(
id=Proteases.PROTEINASE_K,
name="Proteinase K",
full_name="Tritirachium album proteinase K",
regex='(?<=[AEFILTVWY])',
),
Proteases.TRYPSIN: ProteaseInfo(
id=Proteases.TRYPSIN,
name="Trypsin",
full_name="Trypsin (no proline rule)",
regex='(?<=[KR])(?=[^P])',
),
Proteases.TRYPSIN_FULL: ProteaseInfo(
id=Proteases.TRYPSIN_FULL,
name="Trypsin (full cleavage)",
full_name="Trypsin without proline restriction",
regex='(?<=[KR])',
),
Proteases.PROALANASE: ProteaseInfo(
id=Proteases.PROALANASE,
name="Proalanase",
full_name="Proalanase (high specificity)",
regex='(?<=[PA])',
),
Proteases.PROALANASE_LOW: ProteaseInfo(
id=Proteases.PROALANASE_LOW,
name="Proalanase (low specificity)",
full_name="Proalanase Low Specificity",
regex='(?<=[PASG])',
),
Proteases.ELASTASE: ProteaseInfo(
id=Proteases.ELASTASE,
name="Elastase",
full_name="Pancreatic elastase",
regex='(?<=[AGSVLI])',
),
Proteases.PEPSIN: ProteaseInfo(
id=Proteases.PEPSIN,
name="Pepsin",
full_name="Pepsin A",
regex='(?<=[FLWY])',
),
Proteases.THERMOLYSIN: ProteaseInfo(
id=Proteases.THERMOLYSIN,
name="Thermolysin",
full_name="Bacillus thermoproteolyticus thermolysin",
regex='(?<=[LFIAVM])',
),
Proteases.UNSPECIFIC: ProteaseInfo(
id=Proteases.UNSPECIFIC,
name="Non-specific cleavage",
full_name="Non-specific protease",
regex='()',
),
Proteases.NO_ENZYME: ProteaseInfo(
id=Proteases.NO_ENZYME,
name="No cleavage",
full_name="No enzymatic digestion",
regex='_',
),
}