Proteases

The proteases module provides lookups for common proteases and their cleavage patterns.

class tacular.proteases.ProteaseInfo(id, name, full_name, regex)

Bases: object

Information about a protease enzyme

Parameters:

• id (str)

• name (str)

• full_name (str)

• regex (str)

full_name: str

id: str

name: str

property pattern: Pattern[str]

Compiled regex pattern for the protease

regex: str

to_dict()

Convert the ProteaseInfo to a dictionary

Return type:

dict[str, object]

class tacular.proteases.Proteases(*values)

Bases: StrEnum

Enum of protease IDs

ARG_C = 'arg_c'

ASP_N = 'asp_n'

CHYMOTRYPSIN = 'chymotrypsin'

CHYMOTRYPSIN_LOW = 'chymotrypsin_low'

CHYMOTRYPSIN_PROMEGA_HIGH = 'chymotrypsin_promega_high'

CHYMOTRYPSIN_PROMEGA_LOW = 'chymotrypsin_promega_low'

ELASTASE = 'elastase'

GLU_C = 'glu_c'

LYS_C = 'lys_c'

LYS_N = 'lys_n'

NO_ENZYME = 'no_enzyme'

PEPSIN = 'pepsin'

PROALANASE = 'proalanase'

PROALANASE_LOW = 'proalanase_low'

PROTEINASE_K = 'proteinase_k'

THERMOLYSIN = 'thermolysin'

TRYPSIN = 'trypsin'

TRYPSIN_FULL = 'trypsin_full'

UNSPECIFIC = 'unspecific'